1. Basic formula
  2. Formula with functionnals groups
  3. Aromatics
  4. Examples

  1. Basic formula

    The way to write the chemical formula is almost the same as the SMILES except that you have to write all the hydrogen atoms. Atoms are represented by the standard abbreviation of the chemical elements and functionnal groups must be between brackets.
    The method is to write each carbon of the main string with his hydrogen. For example, propane should be written : CH3CH2CH3.
    Methyl groups must be between brackets like this : CH3CH(CH3)CH3 (methyl 2 propane).
    A double-bonded carbon is written 'Cd' and the double-bond is represented as '='. Example of the isoprene: CdH2=Cd(CH3)CdH=CdH2.


  2. Formula with functionnals groups

    Writing a formula with functionnals groups is not different of the basics formula. You juste have to add the function in the main chain (do not forget to write each atom). The aldehydes should be written like this CH3CHO. The ketones should be written like this CH3CO(CH3) (acetaldehyde). The following groups have to be into brackets : (OH), (OOH), (NO2), (ONO2), (OONO2), (O.) and (OO.). Therefore you can write acids (e.g. CH3CO(OH), CH3CO(OOH)), alcools (e.g. CH3CH2(OH)), nitrates (e.g. CH3(ONO2)) or PAN (e.g. CH3CO(OONO2)).


  3. Aromatics

    When you want to write a cycle, you have to choose a node. Then you start to write the formula from this node until you have finished. To indicate the connected nodes, you just have to use a numeric suffix label. If you want to write an aromatic, use 'c' instead of 'C'.
    For example benzene will be c1HcHcHcHcHc1H and cyclohexane will be C1H2CH2CH2CH2CH2C1H2. The 'c1' (or 'C1') means that the two atoms are connected.

    e.g. trinitrotoluene

    c1(NO2)c(CH3)cHc(NO2)cHc1(NO2)


  4. Examples


GROUP ALLOWED in the formula   HOW TO WRITE Example

Skeleton (C chain)

Linear C chain CH3, CH2, CH, C Pentane: CH3CH2CH2CH2CH3
Branched C chain (CH3) EthylPentane: CH3CH2CH(CH2CH3)CH2CH3
C=C double bond Cd=Cd Isoprene: CdH2=CdH(CH3)CdH=CdH2
Oxygen in a C chain -O- Ether: CH3-O-CH3

Functionalities

Alcohol (OH)
Ethanol: CH3CH2(OH)
Aldehyde CHO
Methacrolein: CdH2=Cd(CH3)CHO
Ketone CO
MethylGlyoxal: CH3COCHO
Carboxylic acid CO(OH)
Pyruvic acid: CH3COCO(OH)
PAN CO(OONO2)
Peroxyacetyl nitrate: CH3CO(OONO2)
Nitrate (ONO2)
Ethyl Nitrate: CH3CH2(ONO2)
Peracid CO(OOH)
CH3CH2CO(OOH)
Peroxy radical (OO.)
CH3CH2CH2CH(OO.)CH2CHO
Alkoxy radical (O.)
CH3CH2CH2CH(O.)CH2CHO
Hydro peroxide (OOH)
CH3CH2(OOH)
Peroxy acyl CO(OO.)
CH3CH2CO(OO.)